rs226280498 SNP Detail

Summary

• ID
  rs226280498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30826632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCAGCGG CGGCCCGGGA
  GGGAGGAGGG AGACGGAGGA GGGAGGAGGG AGCGGGAGGG GGCGGGATGA ATCACCGCGG
  GGGGAGGGCG CGGCCGCCCA GCCTTTGCCG CAGCGGCCCG GGAGGCGCCC GGGCACCGGC
  CTCTCCGGTG GCTTCGTGGC TTCTGCACAC CCGTTGCATG GTCTAGGTCA TTCCGGCTTC
  R
  CCAGACTCTC TGGGGGTGTC GGAACCCTTT CCTCTTCCTC TTCTGAGAAA GGTCATCTCT
  AGACACCCAA GAGGACTTGG AGGACAGTTT GAGGGACCAA TTTCCGTCTT CCTAATTATA
  GAGGTTAACC TTATCCAGTT CTTGGGGAGA TAAGGCTGAG ACATCCCAGA GACCTACTTA
  TGACACCTGA GATCCCTCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139533	CHEV_7_31912226	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226280498					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30826632 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	1782 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	374 bp distal
Rr645026	regulatory region 645026	within coordinates
Rr645027	regulatory region 645027	1287 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	204 bp upstream
Tssr71935	transcription start site region 71935	482 bp upstream
Tssr71936	transcription start site region 71936	435 bp upstream
Tssr71937	transcription start site region 71937	273 bp upstream
Tssr71938	transcription start site region 71938	215 bp upstream
Tssr71939	transcription start site region 71939	165 bp upstream
Tssr71940	transcription start site region 71940	30 bp upstream