rs226282366 SNP Detail

Summary

• ID
  rs226282366
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110725087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGGCAT CACCAACCTC
  AGCCTCTTCC CTGACACCAA GCTGCTGGAG TTCCTGGATG TGCAGAAGTA AGCTTGCCTC
  TGGCAGCCCA GCCAGGGGCT CTGGGGGAGG CGACAAACAC CGCAGAGCCC TAGGGATGTG
  GCTGGGTGCT CAACCATCCC ACAACGGAAA ACACCTTTGT CCCCCCACCC CCACCCCCCT
  G
  CGCTGATTTT GCCAGAGCTC CGTGCCAGCC ACTCCAGATT TATTGCCCTG TGGCTCAGTT
  CTTCCACTGA CCCCCAGAGA GAGCCCGCCT TTCCTATCCC TTAGTTCCCA CAGTGCTCAG
  TGATCCCTTA GTTCCCATAG TGCTCCCTGT CGGCCAGCAC TGACTGGGCC TGCCTCCAGA
  TCCACCATTG GACTTGGACT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
ss378912621	MGP_WTSI_9_110798523	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SPRET/EiJ
rs226282366					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378912621	MGP_WTSI_9_110798523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110725087 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	120 bp upstream
Rr192781	regulatory region 192781	87 bp distal
Rr205816	regulatory region 205816	86 bp distal
Rr205817	regulatory region 205817	113 bp proximal
Rr207403	regulatory region 207403	1488 bp distal
Tssr87434	transcription start site region 87434	269 bp downstream
Tssr87435	transcription start site region 87435	238 bp downstream
Tssr87436	transcription start site region 87436	929 bp upstream