rs226288290 SNP Detail

Summary

• ID
  rs226288290
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56429715 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCGACTT TGACATCAGA
  CTGGGCTACA TACTGAGACT GTCCAACAAC AAAACCCACA ACAGCAAAAT GCATTTCAAG
  GCTATGAATT TGCCTTTGAG GACACCTTTG GCTGTATCTA TGTGTGATGT GCACACACAC
  TTGCACAGGC TACAGGTTGA TTCTGGGTGT CTTCCTCAAT GGTTCTCCAC ATTGTCTACT
  S
  AGGCAGGACC TCTCATTAAC TGGGCTAGGC TGACTTGCAA GAGGTCAGGG ACCTTCCTGT
  GTCTGCTTCC CAAGTGCTAA AATTACAGGC ATGTACCATT ACACCTGGCC TTTTCTGTGA
  GTACTAAGGG ATTCAAACTC AGGTCTTCTT GCTTGCACAG GAAGTGTTTC CCCTGCAATC
  AGCTAGTTCC TCCTTGTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398551843	MGP_WTSI_17_56262138	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226288290					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398551843	MGP_WTSI_17_56262138	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56429715 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9340	CpG island 9340	1788 bp distal
Cpgi9341	CpG island 9341	716 bp proximal
Gm56918	predicted gene, 56918	1638 bp downstream
Lrg1	leucine-rich alpha-2-glycoprotein 1	769 bp upstream
Rr340022	regulatory region 340022	714 bp distal
Rr340023	regulatory region 340023	1085 bp proximal
Sema6b	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	370 bp downstream
Tssr5175	transcription start site region 5175	773 bp upstream
Tssr148755	transcription start site region 148755	1897 bp upstream
Tssr148756	transcription start site region 148756	1867 bp upstream
Tssr148757	transcription start site region 148757	1687 bp upstream
Tssr148758	transcription start site region 148758	1652 bp upstream
Tssr148759	transcription start site region 148759	795 bp upstream
Tssr148760	transcription start site region 148760	757 bp upstream
Tssr148761	transcription start site region 148761	729 bp upstream
Tssr148762	transcription start site region 148762	714 bp upstream