rs226289019 SNP Detail

Summary

• ID
  rs226289019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:120238708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAAGCA CCGGGTGCTC
  CTCAGGAGCC ACACGCAGCT CATTGTAGAA GGTGTGGTGC CAGATCTTCT CCATGTCGTC
  CCAGTTAGTG ACAATGCCGT GTTCGATAGG GTACTTCAGG GTCAGGATAC CCCTCTTGCT
  CTGGGCCTCG TCACCCACGT ATGAGTCTTT CTGGCCCATG CCCACCATGA CGCCCTGCGA
  R
  AGAAAAGGCC GCGGTCAGAC TCGCCCCACC CACCGCGCGA CCCGGGCCCA GAGAGAACAC
  AAGGGAGGCC ACTCCTCTCA ACTAACCTGG TGTCGGGGGC GCCCTACGAT GGAAGGGAAC
  ACGGCCCTGG GGGCGTCGTC GCCAGCAAAG CCGGCTTTGC ACATGCCGGA GCCATTGTCA
  ATGACGAGTG CGGCGATTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384941853	MGP_WTSI_11_120209196	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226289019					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384941853	MGP_WTSI_11_120209196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:120238708 () rs orientation: forward

Symbol	Name	Function Class
0610009L18Rik	RIKEN cDNA 0610009L18 gene	796 bp upstream
Actg1	actin, gamma, cytoplasmic 1	within coordinates
Cpgi4301	CpG island 4301	within coordinates
Gm55891	predicted gene, 55891	1063 bp upstream
Gm72337	predicted gene, 72337	919 bp downstream
Mir6935	microRNA 6935	469 bp upstream
Rr461639	regulatory region 461639	199 bp proximal
Rr461640	regulatory region 461640	386 bp proximal
Rr461641	regulatory region 461641	583 bp proximal
Rr461642	regulatory region 461642	1691 bp proximal
Tssr3756	transcription start site region 3756	1396 bp upstream
Tssr106280	transcription start site region 106280	800 bp upstream
Tssr112287	transcription start site region 112287	423 bp upstream
Tssr112288	transcription start site region 112288	297 bp downstream
Tssr112289	transcription start site region 112289	322 bp downstream
Tssr112290	transcription start site region 112290	613 bp downstream
Tssr112291	transcription start site region 112291	631 bp downstream
Tssr112292	transcription start site region 112292	869 bp downstream
Tssr112293	transcription start site region 112293	1532 bp downstream
Tssr112294	transcription start site region 112294	1962 bp downstream