rs226292725 SNP Detail

Summary

• ID
  rs226292725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44889351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GCGCGCGCGC GCCTTTGGAG GCCAGAGGAC AACATTGGAA GCTGTTCATC
  TTTTTTTAAA AAAATTTTAA CGATGTGTGT GTGTGTGTAT GTCTGCGCCA CATGGTGCTT
  ATAGAGGGCA GAAGATAGAT AAATTTTCGG GACTGGGCCT CTCCTGCCAC AGGCTGTGCT
  Y
  CAAGGCAGGT TCTGCCATCT CCAATAAGCC AAGTAAAAGA ACCAAATTTC TAGAGGAAAC
  AGAAAAAGGT TTACACACAG TGTGGTCACA TTTAGAAGGG CACAAAGCGA TCTGGTGATC
  CCCTTCAATT CATTTTTGGG GTCCCTCACT GAGACTGAGG TGTAAATAGA AGGCTAATGT
  TATGCATGTC TATGCAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371173040	MGP_WTSI_7_52495297	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226292725					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371173040	MGP_WTSI_7_52495297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44889351 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	812 bp upstream
Cpgi19038	CpG island 19038	643 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1158 bp upstream
Tssr66503	transcription start site region 66503	1147 bp upstream
Tssr66504	transcription start site region 66504	1182 bp upstream
Tssr72351	transcription start site region 72351	1171 bp upstream
Tssr72352	transcription start site region 72352	1063 bp upstream
Tssr72353	transcription start site region 72353	861 bp upstream
Tssr72354	transcription start site region 72354	824 bp upstream
Tssr72355	transcription start site region 72355	794 bp upstream
Tssr72356	transcription start site region 72356	640 bp upstream
Tssr72357	transcription start site region 72357	632 bp upstream
Tssr72358	transcription start site region 72358	607 bp upstream
Tssr72359	transcription start site region 72359	577 bp upstream
Tssr72360	transcription start site region 72360	540 bp upstream
Tssr72361	transcription start site region 72361	517 bp upstream