rs226298219 SNP Detail

Summary

• ID
  rs226298219
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78377960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGAAAAC CACTCCAAAA
  CCACACAGCA CAAGGCCAGC CTCGGGCAGA GTGAGTACAG CCCAAGAATC TCAGAGTCCC
  AGGCACTGTC CCCCTGAGGC TCACCCACGT ATGCCCTTCG CAACCACCAG ACGTTCATCT
  CCCTGACTCA TATATGTCTC CGCTGAGGCC CTGAAAAGGT CTGTCATCCC ACAGACCCAG
  R
  CTGCTCTAAC TGGGTCACCT GATTTCCAGT ACAGTGGTGA TGCTGACGGA GGAGGAGGGT
  CAGCCATGAG TGACAGTCGT GTCACACTCC CTGCGTCAGA CTGACCCACA CATGTCACAG
  AGAGGTCTCA CAGCACAAGA GCAGGTTCTG TGACTGACTG CTCCTTCCCT ATGGGAAGAT
  CAGGGCCTAA AGCAGCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394655150	MGP_WTSI_15_78324190	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226298219					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394655150	MGP_WTSI_15_78324190	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78377960 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Il2rb	interleukin 2 receptor, beta chain			Intron
				mRNA-UTR
Rr505292	regulatory region 505292			15 bp distal
Rr505293	regulatory region 505293			within coordinates
Rr505294	regulatory region 505294			1026 bp proximal
Rr505295	regulatory region 505295			1095 bp proximal
Rr505296	regulatory region 505296			1501 bp proximal
Tssr131958	transcription start site region 131958			91 bp upstream
Tssr131959	transcription start site region 131959			109 bp upstream
Tssr135223	transcription start site region 135223			143 bp upstream
Tssr135224	transcription start site region 135224			13 bp upstream
Tssr135225	transcription start site region 135225			598 bp downstream
Tssr135226	transcription start site region 135226			612 bp downstream
Tssr135227	transcription start site region 135227			1277 bp downstream
Tssr135228	transcription start site region 135228			1299 bp downstream
Tssr135229	transcription start site region 135229			1452 bp downstream
Tssr135230	transcription start site region 135230			1481 bp downstream