rs226308181 SNP Detail

Summary

• ID
  rs226308181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40288220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTCCTCTG TTCCTGATGG AGCAAGCTGG
  GGTAGCCAGC AGGCTCTGAG CTCCCAAGCA GTTAGTTCTG AGCACAGAGA ACTCACAGTT
  CTCTTCCCCT ACCGGGGACA TTGCCCACAT GACCAGGGCA TGTGGTGAGC AGCTCTGAGT
  R
  GCAAAGCAGG CTTTCAGTCA CCTGAAGTCA GGAATCCTGT CAAGGTGGCC CCAGCAGCCT
  GTCCTGACTT ACGACTTAGG CAACTCATCC TCACCAACCC AAGCAGCCAA CAGACCTAGG
  CACTCCAGGA GCAACACTAA GTGAGAGGGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915615	CHEV_9_40184509	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226308181					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40288220 () rs orientation: forward

Symbol	Name	Function Class
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676805	regulatory region 676805	514 bp distal
Rr676806	regulatory region 676806	646 bp distal
Rr676807	regulatory region 676807	595 bp distal
Rr676808	regulatory region 676808	88 bp distal
Tssr88904	transcription start site region 88904	785 bp upstream
Tssr88905	transcription start site region 88905	661 bp upstream
Tssr88906	transcription start site region 88906	566 bp upstream
Tssr88907	transcription start site region 88907	509 bp upstream
Tssr88908	transcription start site region 88908	480 bp upstream
Tssr88909	transcription start site region 88909	77 bp upstream