rs226318267 SNP Detail

Summary

• ID
  rs226318267
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:125233104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG GATGACCACG GAGCCTACTC
  K
  CGCGCACAAA CACACACACA CCCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321674433	CHEV_5_125636410	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226318267					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:125233104 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ncor2	nuclear receptor co-repressor 2			Intron
				Noncoding-Transcript-Variant
Rr620651	regulatory region 620651			1530 bp distal
Rr620652	regulatory region 620652			298 bp distal
Rr620653	regulatory region 620653			567 bp distal
Rr620654	regulatory region 620654			1578 bp proximal
Rr620655	regulatory region 620655			1699 bp proximal