rs226319150 SNP Detail

Summary

• ID
  rs226319150
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112424690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT CAGGGCTGCG TGGCGCGGTC
  S
  GGACGGTGGG CGGCGCGGAC AGGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321645176	CHEV_5_112705844	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226319150					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112424690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	within coordinates
D5Mit94	DNA segment, Chr 5, Massachusetts Institute of Technology 94	857 bp proximal
D5Mit94.1	DNA segment, Chr 5, Massachusetts Institute of Technology 94.1	954 bp proximal
Rr399260	regulatory region 399260	248 bp downstream
Tpst2	protein-tyrosine sulfotransferase 2	within coordinates
Tssr47986	transcription start site region 47986	131 bp downstream
Tssr47987	transcription start site region 47987	68 bp downstream
Tssr47988	transcription start site region 47988	54 bp downstream
Tssr47989	transcription start site region 47989	632 bp upstream
Tssr52564	transcription start site region 52564	456 bp upstream
Tssr52565	transcription start site region 52565	442 bp upstream