rs226324446 SNP Detail

Summary

• ID
  rs226324446
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110361586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGAGGGAGGG AGCGAGCGAG
  M
  GAGCGAGAGA GCGGGCGGGC GGGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920026837	MGP_WTSI_9_110532518	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226324446					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920026837	MGP_WTSI_9_110532518	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110361586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	within coordinates
Gm69936	predicted gene, 69936	161 bp upstream
Rr687129	regulatory region 687129	1441 bp distal
Rr687130	regulatory region 687130	172 bp distal
Rr687131	regulatory region 687131	151 bp distal
Rr687132	regulatory region 687132	within coordinates
Rr687133	regulatory region 687133	90 bp proximal
Rr687134	regulatory region 687134	330 bp proximal
Rr687135	regulatory region 687135	559 bp proximal
Setd2	SET domain containing 2	within coordinates
Tssr3033	transcription start site region 3033	175 bp upstream
Tssr87391	transcription start site region 87391	51 bp downstream
Tssr87392	transcription start site region 87392	within coordinates
Tssr87393	transcription start site region 87393	89 bp upstream
Tssr87394	transcription start site region 87394	124 bp upstream
Tssr91630	transcription start site region 91630	156 bp upstream
Tssr91631	transcription start site region 91631	257 bp downstream
Tssr91632	transcription start site region 91632	262 bp downstream
Tssr91633	transcription start site region 91633	290 bp downstream
Tssr91634	transcription start site region 91634	314 bp downstream
Tssr91635	transcription start site region 91635	400 bp downstream
Tssr91636	transcription start site region 91636	426 bp downstream