About   Help   FAQ
rs226330796 SNP Detail
Summary
  • ID
    rs226330796
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:108691755 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTAGTGTAGT GGTCCATTGG
    AGGGAGGGGC TAGGCTAGAG GTCAGACGTA ATTAACAACG GTTTTCCTGA ACCTTTCCCC
    AGCCCTCACC AATTCGGGCC ACCTCATCCG GCTGTTTCTT TAAGCCTGGA TATCAAGGAC
    TTAGGGAAAG CAAACTCGAG ATGTACTCCC ACATCCTTCT ACGTGATCTG CACCTTTAAA
    Y
    TTACTCCATT CCAAAGCGGA CCCTCGAGGC ACCGCCCACA TCCGTCTAAC ATCACTTCCT
    TCAGTGTTTG GCTAGGAAAA AAAAAAAAAA AAAAAAATCT GGGAATCCGA GGGGTTGGGC
    TGAACGGCGA TAAGGGGGCA GAGCGGAGCT TCTGCTGGAA ATCCTGTTCC CTCAATCCGG
    TGGCTCTGTG CAACTACCAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss362789953 MGP_WTSI_4_108507163 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226330796 SNP C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss362789953 MGP_WTSI_4_108507163 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:108691755 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Btf3l4 basic transcription factor 3-like 4 944 bp upstream
Cpgi14564 CpG island 14564 419 bp distal
Cpgi14565 CpG island 14565 104 bp proximal
Rr376990 regulatory region 376990 within coordinates
Rr597224 regulatory region 597224 1015 bp distal
Rr597225 regulatory region 597225 454 bp distal
Rr597226 regulatory region 597226 within coordinates
Tssr38313 transcription start site region 38313 52 bp upstream
Tssr38314 transcription start site region 38314 89 bp upstream
Tssr38315 transcription start site region 38315 151 bp upstream
Tssr38316 transcription start site region 38316 244 bp upstream
Tssr42738 transcription start site region 42738 961 bp upstream
Tssr42739 transcription start site region 42739 932 bp upstream
Tssr42740 transcription start site region 42740 304 bp upstream
Txndc12 thioredoxin domain containing 12 (endoplasmic reticulum) 120 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory