rs226333522 SNP Detail

Summary

• ID
  rs226333522
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38306232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGATTCC CAGCAACCAC
  ATGGTGGCTC ACAACCATCC GTAACAAGAT CTGGCCCCCT CTTCTGGAGT GTCTGAAGAC
  AGCTACAGTG CACTTACATA TAATAAATAA ATAAATCTTT AAAAAAAAAA AAAGAATTAA
  CTTCCTAAGC TTACACTGTA GGATGAATGG GTCTTCACTG ACCGATCTCT CTCTCTTTTA
  W
  AAAAAAAAAA AAAAAAGGCC CTAAGCCAGA ACACTGACTT CAGCCATTCA AGTACAAGGA
  GGAAAATCAC CAGGGAAAAG AACAAACATC AAAGTTGATT CGGTTTCGTT TGAACTCGTG
  CTTACAAGAG AGCACGTCCT GATAACGTAT CTTTCCTGAT GTTTTTTCAA TCACTATGTT
  TTCTTCAAGC TGTTGGCTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	WSB/EiJ	ZALENDE/EiJ
ss388310616	MGP_WTSI_13_38214125	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CE/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	WSB/EiJ	ZALENDE/EiJ
rs226333522					SNP	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388310616	MGP_WTSI_13_38214125	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38306232 () rs orientation: forward

Symbol	Name	Function Class
Rr271625	regulatory region 271625	32 bp distal
Rr275880	regulatory region 275880	969 bp proximal
Rr275881	regulatory region 275881	1568 bp proximal
Rr279089	regulatory region 279089	720 bp distal
Rr279090	regulatory region 279090	230 bp distal
Rr279091	regulatory region 279091	151 bp proximal
Rr388287	regulatory region 388287	907 bp upstream