rs226340648 SNP Detail

Summary

• ID
  rs226340648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:75236936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG ATATCCATGT CATTGTTAAT
  Y
  ACATGTGAAC AAGGTAATCA GGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322267516	CHEV_7_82732074	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226340648					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:75236936 () rs orientation: forward

Symbol	Name	Function Class
Akap13	A kinase anchor protein 13	Intron
Rr400375	regulatory region 400375	789 bp upstream
Rr649259	regulatory region 649259	1473 bp distal
Rr649260	regulatory region 649260	within coordinates
Tssr67241	transcription start site region 67241	1474 bp downstream
Tssr67242	transcription start site region 67242	1000 bp downstream
Tssr67243	transcription start site region 67243	968 bp downstream
Tssr67244	transcription start site region 67244	953 bp downstream
Tssr67245	transcription start site region 67245	916 bp downstream
Tssr67246	transcription start site region 67246	884 bp downstream
Tssr67247	transcription start site region 67247	855 bp downstream
Tssr67248	transcription start site region 67248	812 bp downstream
Tssr67249	transcription start site region 67249	776 bp downstream
Tssr67250	transcription start site region 67250	740 bp downstream
Tssr73048	transcription start site region 73048	700 bp downstream