rs226343988 SNP Detail

Summary

• ID
  rs226343988
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90944626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTAGGCT CGGTAACTAA
  CAACTCATTG TACCAAGACC TGCACCCCTG AGTCTTGGTC CAGACTGGCC CCTAGTTTTC
  CCTTCTTAGT CCTCGACCCT GCTGACCCCT CCTGCAGCCC TGGGCTATCC CTTATGGACT
  TCACGCCTGT TCTTCCCTTT GCAGGTTTCC TACATGCCCC GGATGTGCTT CCCTTATCAA
  W
  CCTTGTCCCC AGCCCACCAG CAGAGCTCAG ATGAGGAGGA GGGTGAGAGG CAGAGCCCTC
  CCCTGGAGGT GTCTGATGGA GAAGCTGATG GCTTGGAGCC TGGGCCAGGT CTTCTGCACG
  GGGAGACAGG TAGGGTCCAG CATCACCGAT CCAGTGACTG TAGCTGCATT TACATTTATG
  AACCTTGCAT ATTCCTAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354807899	MGP_WTSI_2_90954438	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226343988					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354807899	MGP_WTSI_2_90954438	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90944626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11896	CpG island 11896	761 bp proximal
Rr373534	regulatory region 373534	614 bp downstream
Rr560649	regulatory region 560649	1393 bp distal
Rr560650	regulatory region 560650	110 bp distal
Rr560651	regulatory region 560651	908 bp proximal
Rr560652	regulatory region 560652	971 bp proximal
Spi1	Spi-1 proto-oncogene	Coding-NonSynonymous
Tssr18850	transcription start site region 18850	1003 bp downstream
Tssr18851	transcription start site region 18851	within coordinates
Tssr18852	transcription start site region 18852	34 bp upstream
Tssr18853	transcription start site region 18853	879 bp upstream
Tssr18854	transcription start site region 18854	914 bp upstream
Tssr18855	transcription start site region 18855	1079 bp upstream
Tssr18856	transcription start site region 18856	1126 bp upstream
Tssr18857	transcription start site region 18857	1241 bp upstream
Tssr18858	transcription start site region 18858	1305 bp upstream
Tssr18859	transcription start site region 18859	1412 bp upstream
Tssr25158	transcription start site region 25158	1464 bp downstream