rs226350092 SNP Detail

Summary

• ID
  rs226350092
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:58110589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTTTAT CTGTAGGCGT
  CATTAAGAGA ATTGAGACTG CCGTGAAAGA AGGGGAGGTA GTGAAAGTGG TTTCTATAGT
  TAAAGAGATC ATACAGAACG TTTCCAGAAA CAAAATAAAG ATCGCTGTGA CTGGGGACTC
  TGGCAATGGC ATGTCATCTT TCATCAATGC CCTTAGGCTC ATCGGACACG AAGAGAAAGA
  Y
  TCAGCTCCCA CTGGGGTGGT GAGAACCACC CAGAAACCAA CCTGTTACTT TTCCTCCCAC
  TTTCCCTATG TGGAGCTGTG GGACCTGCCT GGCTTAGGGG CCACAGCCCA GAGTGTGGAG
  AGCTACCTGG AAGAGATGCA GATCAGCATA TACGACCTTA TCATCATCGT AGCTTCTGAG
  CAGTTCAGCT TAAATCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323688629	CHEV_11_58033265	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226350092					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58110589 () rs orientation: forward

Symbol	Name	Function Class
Irgm2	immunity-related GTPase family M member 2	Coding-Synonymous
Tssr101708	transcription start site region 101708	416 bp upstream
Tssr101709	transcription start site region 101709	718 bp upstream
Tssr101710	transcription start site region 101710	753 bp upstream
Tssr101711	transcription start site region 101711	914 bp upstream
Tssr101712	transcription start site region 101712	968 bp upstream
Tssr101713	transcription start site region 101713	1286 bp upstream
Tssr101714	transcription start site region 101714	1335 bp upstream