rs226362407 SNP Detail

Summary

• ID
  rs226362407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75368447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTGCCA GTGACTGTCT
  AGCGAGGTCT CCAGTTAGGT CTAATTCCAT GTTTGTGCTG GACGCAGCTC CTTTAGCAGC
  ATCCCCAAGC CCTGCTACAG CCGAATTACG CTCATAGTAA GGACCACCAA CTAGTCCCCG
  CCCCCCAACA CTTCCCCACC CCCCCGCACC CGCACACCCC CCCCCCCCAG CTAGCCCGGT
  R
  AGAAGCGCAG GCGCACGAGG GTTGGGCACG TCGGGAACTA GGGGCGGGGC ATTGAGCCCC
  GCCCATCTGC CCCGCCCACT CGATCCACCC ACTGATTTCG CCACCTTAGG CCAGTGGCCC
  CTAATTCTGC TGCGGGCAGC GCAGGATGCC CGGAGGCTGA AGTGGTGGAG CCGGGAGGAG
  TGGCTCCACG TGTAGCTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss391575947	MGP_WTSI_14_75530814	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs226362407					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575947	MGP_WTSI_14_75530814	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75368447 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	215 bp distal
Cpgi6737	CpG island 6737	87 bp proximal
Gm62951	predicted gene, 62951	386 bp upstream
Lcp1	lymphocyte cytosolic protein 1	123 bp upstream
Lrrc63	leucine rich repeat containing 63	126 bp upstream
Rr297500	regulatory region 297500	within coordinates
Tssr4477	transcription start site region 4477	373 bp upstream
Tssr126606	transcription start site region 126606	100 bp upstream
Tssr126607	transcription start site region 126607	219 bp upstream
Tssr126608	transcription start site region 126608	266 bp upstream
Tssr126609	transcription start site region 126609	525 bp upstream
Tssr126610	transcription start site region 126610	577 bp upstream
Tssr126611	transcription start site region 126611	1014 bp upstream
Tssr126612	transcription start site region 126612	1039 bp upstream
Tssr129761	transcription start site region 129761	402 bp upstream
Tssr129762	transcription start site region 129762	385 bp upstream
Tssr129763	transcription start site region 129763	358 bp upstream
Tssr129764	transcription start site region 129764	64 bp upstream
Tssr129765	transcription start site region 129765	within coordinates
Tssr129766	transcription start site region 129766	568 bp downstream
Tssr129767	transcription start site region 129767	610 bp downstream