rs226368431 SNP Detail

Summary

• ID
  rs226368431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156077613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGGAAGG CGCCTGCGCG
  ACTCGGAGAC TGGCGCGGCC GGTTAGGCCT GGTAACGTGG GAGGAGCCCC GAGGCGCACC
  GTGGCTGGGG GTTTCGACTC CCCGGAGCTG ATATCCAGGG CGGCTTTGAA GGATAGGGCT
  GGGCCCAGAA TGATTGACAC GTGACCCCGC GCGCCATTCC TATTGGTTGC TTCGCAGAGG
  Y
  TGCTTCCGCC CATAAGAAAG ATGGCGGCTT CGAGATTCGT ACCGGAGGCC GGGTGTTTTT
  TTCCCCACCG TTCCCGGTTG TCTTATTCGC CCCTTCCCGG AAGAAAGATG GCGGCGGCCT
  GAGCCGAGTT CTGCGTAAGA CTTGGCGGGC GCCCAGACCC GGCGCATCAG AAGCCGGGGT
  GAGTGAGGGG TCCCTGCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363809049	MGP_WTSI_4_155367265	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226368431					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363809049	MGP_WTSI_4_155367265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156077613 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	507 bp upstream
Cpgi15496	CpG island 15496	within coordinates
Rr377473	regulatory region 377473	within coordinates
Rr606629	regulatory region 606629	1794 bp distal
Rr606630	regulatory region 606630	561 bp distal
Rr606631	regulatory region 606631	within coordinates
Rr606632	regulatory region 606632	458 bp distal
Rr606633	regulatory region 606633	184 bp distal
Rr606634	regulatory region 606634	97 bp proximal
Rr606635	regulatory region 606635	232 bp proximal
Sdf4	stromal cell derived factor 4	within coordinates
Tssr1404	transcription start site region 1404	210 bp downstream
Tssr40748	transcription start site region 40748	743 bp downstream
Tssr40749	transcription start site region 40749	within coordinates
Tssr40750	transcription start site region 40750	74 bp upstream
Tssr40751	transcription start site region 40751	149 bp upstream
Tssr40752	transcription start site region 40752	292 bp upstream
Tssr44987	transcription start site region 44987	814 bp upstream
Tssr44988	transcription start site region 44988	482 bp upstream