rs226370412 SNP Detail

Summary

• ID
  rs226370412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134733508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCCCAT CTATGAATAT
  ATGCATTGAC CTCTGACTCT GTGTCTTCCT TCCCTAGGGA CAGAGTCTCT ACTTACCTTG
  GTATCCCAGG GCTCCAAGGG CTCCTCCATA GGGCTTCGGG GGTTTTCCTG TGTATGGGGG
  TGTTGGGAAA GGATGAGGTG GGGAGGATAC TGGGTTCCCC TATCTCTACC AGCATCCCCA
  Y
  CTTGTGCCAA CTCCACCCTG TTTTTGTAGG CTCCTAAGAC CTTCCTGCCA ATCAGCCCAC
  CTACCTCTGG TCTTGCTAAC ACCTTTCTTC CCAGAGTCAA GCTCTGTAGT ATTGGGACGG
  AACCTTGACC TAGTGCATTC TAGACAAGAG CTCTGTTCCT GAGTGACACT CCTGGATCCT
  ACCTGGGGGA TTCTAGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366817575	MGP_WTSI_5_135180524	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226370412					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366817575	MGP_WTSI_5_135180524	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134733508 () rs orientation: forward

Symbol	Name	Function Class
Eln	elastin	within coordinates
Rr110186	regulatory region 110186	within coordinates
Rr131008	regulatory region 131008	116 bp distal
Rr399407	regulatory region 399407	195 bp downstream
Tssr49100	transcription start site region 49100	1574 bp downstream
Tssr49101	transcription start site region 49101	1089 bp downstream
Tssr53672	transcription start site region 53672	1629 bp upstream
Tssr53673	transcription start site region 53673	1587 bp upstream
Tssr53674	transcription start site region 53674	1480 bp upstream
Tssr53675	transcription start site region 53675	1467 bp upstream
Tssr53676	transcription start site region 53676	1406 bp upstream
Tssr53677	transcription start site region 53677	1301 bp upstream
Tssr53678	transcription start site region 53678	1271 bp upstream
Tssr53679	transcription start site region 53679	1248 bp upstream
Tssr53680	transcription start site region 53680	1215 bp upstream
Tssr53681	transcription start site region 53681	1118 bp upstream
Tssr53682	transcription start site region 53682	1048 bp upstream
Tssr53683	transcription start site region 53683	830 bp upstream