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rs226373121 SNP Detail
Summary
  • ID
    rs226373121
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:136012496 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATTTCTATT CATGGCCCTG
    AGATCTCTGG AATCTGCTGG TGATATCTAG AACCTTTCTG AACGTCAGGC CTCTTTAGAT
    CTCTGAGGAG CCAGCGACCA CAGACCAGGA GGTAAGCCTG TCCGTTCTGT CCTAATCTGG
    TTTTGTGATT TCTTTGAAAC AGAGACTACT AGCATCCTTA GGACTCCAGG TTGTCGCAGG
    Y
    CTAAGGTTTT CATGATGTTG GGAGGTCTCC AAGATTCCTT TCAGCAGAGA CACCCTCAAG
    AGTACCAAGT CCCTGAGTCT CCCACTCCAG GGCCAGCTAT TTCCCTACAC ACCCTACCCC
    ACCCCCCCGC TTCTGATTTC AATGTTTTGG CGACTTAGAT GGGTGCACTT GAGCTCCGTC
    TCTATAAAAG AGCTCGAGAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss363387914 MGP_WTSI_4_135841100 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226373121 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss363387914 MGP_WTSI_4_135841100 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:136012496 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi15107 CpG island 15107 635 bp proximal
Rr398613 regulatory region 398613 60 bp upstream
Rr602339 regulatory region 602339 1783 bp distal
Rr602340 regulatory region 602340 609 bp distal
Rr602341 regulatory region 602341 392 bp proximal
Rr602342 regulatory region 602342 893 bp proximal
Tssr39694 transcription start site region 39694 533 bp downstream
Tssr39695 transcription start site region 39695 499 bp downstream
Tssr39696 transcription start site region 39696 468 bp downstream
Tssr39697 transcription start site region 39697 876 bp upstream
Tssr39698 transcription start site region 39698 930 bp upstream
Tssr39699 transcription start site region 39699 993 bp upstream
Zfp46 zinc finger protein 46 Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory