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rs226373610 SNP Detail
Summary
  • ID
    rs226373610
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:4539892 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCGATGGCTG CTCCGTAAGT
CATGGGAAAA TGGCGGGAGA ACATTTATTT TTAGGAAATG AGGTGAGCGG TTCTAGCTTA
GGCTATTAAA TGAACAGATG AATGAGAGGC CTAACTTAAT TGACCTTTCT TCTTCAAGCA
CATTTAAGTG CATCCAACAA TTCTCTGAAT TCTAATACAG AAATTCGTAT TAGATACCAC
Y
TTCTTTGCAA CTCTCACACA CTGAGCTGAC TCCTATGCCC ACACAGTCCC TGCTTTCCTC
TCAGCATTTA GAGTTCCTAT GTATTAACAT ATACCAAGAA TTTAAAACTT ATTGAGGTTT
AAAATGCTTC AGTTGCACCT TAGAATATGG CTACATTCAA TTTTTCTGTA GACTTTTACC
TATATAAAAG AGTATATGTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss367230149 MGP_WTSI_6_4489892 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226373610 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss367230149 MGP_WTSI_6_4489892 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:4539892 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a2 collagen, type I, alpha 2 within coordinates
Tssr1769 transcription start site region 1769 1912 bp downstream
Tssr1770 transcription start site region 1770 1224 bp downstream
Tssr54728 transcription start site region 54728 1936 bp downstream
Tssr54729 transcription start site region 54729 1882 bp downstream
Tssr54730 transcription start site region 54730 1247 bp downstream
Tssr54731 transcription start site region 54731 1202 bp downstream
Tssr54732 transcription start site region 54732 1115 bp downstream
Tssr54733 transcription start site region 54733 418 bp downstream
Tssr54734 transcription start site region 54734 401 bp downstream
Tssr54735 transcription start site region 54735 390 bp downstream
Tssr54736 transcription start site region 54736 364 bp downstream
Tssr54737 transcription start site region 54737 347 bp downstream
Tssr54738 transcription start site region 54738 304 bp downstream
Tssr54739 transcription start site region 54739 292 bp downstream
Tssr54740 transcription start site region 54740 215 bp downstream
Tssr54741 transcription start site region 54741 114 bp upstream
Tssr54742 transcription start site region 54742 636 bp upstream
Tssr54743 transcription start site region 54743 651 bp upstream
Tssr54744 transcription start site region 54744 682 bp upstream
Tssr54745 transcription start site region 54745 694 bp upstream
Tssr54746 transcription start site region 54746 707 bp upstream
Tssr54747 transcription start site region 54747 738 bp upstream
Tssr54748 transcription start site region 54748 782 bp upstream
Tssr54749 transcription start site region 54749 951 bp upstream
Tssr54750 transcription start site region 54750 964 bp upstream
Tssr54751 transcription start site region 54751 972 bp upstream
Tssr54752 transcription start site region 54752 1015 bp upstream
Tssr54753 transcription start site region 54753 1037 bp upstream
Tssr54754 transcription start site region 54754 1146 bp upstream
Tssr54755 transcription start site region 54755 1545 bp upstream
Tssr59718 transcription start site region 59718 829 bp downstream
Tssr59719 transcription start site region 59719 897 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory