rs226384616 SNP Detail

Summary

• ID
  rs226384616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:49737327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCTTGT CTAACCCGGC
  TGTCTTTAGT CCTTTTCCAA GTCGCCTCTC CATTTGCACC TGCTACAACC GAGGCCTGAC
  AATGGCTCCT ACACTGTAGT CGCAAAGTCA CGCCTCGCCC CTCCCCGGCT CTGGCTCCCC
  TTGGCCCACC CTCTCCGGCG CATGCGGGTC TCCTGGCCCT GGAGGGCGGG CTCAGGAGAC
  R
  GTCCTAGCTT GACCTGGATC CCTAACTCTG TGCACACTGG CGGACGCTCT TCCAGCAAGC
  AGACGGTCAG ACGGCGAGCC GCCTAGGGGG CGCCACTCTG CACTAGGGCA TCCAGAGCGC
  GCCACTGGCC CCGCCCACAC CCAGCCTCCA GCCACGCCCG TACTGCCCAG CCTTGCCCAC
  CCCCAGTCTC AATTGGTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383316510	MGP_WTSI_11_49660002	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226384616					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383316510	MGP_WTSI_11_49660002	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:49737327 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2801	CpG island 2801	within coordinates
Gm74054	predicted gene, 74054	106 bp upstream
Mapk9	mitogen-activated protein kinase 9	251 bp upstream
Rr446291	regulatory region 446291	1041 bp distal
Rr446292	regulatory region 446292	1483 bp distal
Rr446293	regulatory region 446293	1330 bp distal
Rr446294	regulatory region 446294	117 bp distal
Rr446295	regulatory region 446295	within coordinates
Rr446296	regulatory region 446296	27 bp proximal
Rr446297	regulatory region 446297	264 bp proximal
Rr446298	regulatory region 446298	1598 bp proximal
Tssr3485	transcription start site region 3485	438 bp upstream
Tssr101198	transcription start site region 101198	232 bp upstream
Tssr101199	transcription start site region 101199	264 bp upstream
Tssr101200	transcription start site region 101200	305 bp upstream
Tssr101201	transcription start site region 101201	384 bp upstream