rs226391330 SNP Detail

Summary

• ID
  rs226391330
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89303011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTTCAT GTTTCCATGT
  TTGCTTTTCC TTGTGGTACA AATAGTTATT AGTTCCCTTT CATGTTGGGG GAACACGGAC
  TTGAAATTTC TGTCTAAATC CCCTCCCCCG CTTTGGGTCG TAACTGCCAA ACCAGAGACC
  GAGGCCAAGA AGCGCTGGTG GAACCCCGCC CCCTTATTGG GAATCTGGCG TCTCCCCTGA
  Y
  CCCCATATCA ATCCCATATA CACCTGAGCT GCTATAGAAC TGGAAGGCAA GTGTGGGGTG
  TGCAGGGGCT TCCTGGTGAG CGTCCCCCAT CCTCACATTC AGACTTACAT CTTCAGGCAA
  CTTTCTAGAT TCTAGACTTT AATGCACGAG AGAAGTAGGT GAGTAAATAC CCCGAGAATG
  AGATGTTTGC CCTGAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811640	MGP_WTSI_3_89199626	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226391330					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811640	MGP_WTSI_3_89199626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89303011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13429	CpG island 13429	988 bp distal
Cpgi13430	CpG island 13430	335 bp proximal
Gm15417	predicted gene 15417	within coordinates
Rr381	regulatory region 381	443 bp proximal
Rr397788	regulatory region 397788	1838 bp downstream
Rr580073	regulatory region 580073	1427 bp distal
Rr580074	regulatory region 580074	982 bp distal
Rr580075	regulatory region 580075	within coordinates
Rr580076	regulatory region 580076	18 bp proximal
Rr580077	regulatory region 580077	245 bp proximal
Rr580078	regulatory region 580078	863 bp proximal
Tssr30100	transcription start site region 30100	1840 bp downstream
Tssr30101	transcription start site region 30101	1383 bp downstream
Tssr30102	transcription start site region 30102	5 bp upstream