rs226401323 SNP Detail

Summary

• ID
  rs226401323
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82293197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGAGAGT TCTACTCCCC
  CCTCCTCCCC AGAATAAACT TTTGGTCTCT GCTTTTTCTC ATTGTTTTTC CTTCTCTCTG
  TTCTGTTTAT TTCTGCTTCT GTCATTTCTT TCTCTCTTCC TAGCTTCTGT TTAGTTTCTT
  GTCTTTCTGG TTCTATAATT TGTATTAGCT CAGTGACTTG GCGTTCCCTT TATATCGAGT
  W
  CTGTACATTT AGCCCTGTCT CCGCTGTAAT ATCTTGTGTT TTGAAATGTT GTATTTTATT
  CTCTTGTTTC AGTTAGCTGT TTACTAATGT ATTGCTCAAT ATTGATGATG ATTTTATGGT
  TTTTCTGGCT TTATTCCTGT AACTGACTTC TAACTTTTTT CTGTTGTGGT TGGGGAAGAT
  ATTTTGCATC ATATCTAGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386668665	MGP_WTSI_12_83347410	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226401323					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386668665	MGP_WTSI_12_83347410	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82293197 () rs orientation: forward

Symbol	Name	Function Class
Rr261652	regulatory region 261652	1597 bp distal
Rr268532	regulatory region 268532	within coordinates
Rr403397	regulatory region 403397	683 bp downstream
Sipa1l1	signal-induced proliferation-associated 1 like 1	within coordinates
Tssr114221	transcription start site region 114221	1750 bp downstream
Tssr114222	transcription start site region 114222	896 bp downstream
Tssr114223	transcription start site region 114223	722 bp downstream
Tssr114224	transcription start site region 114224	678 bp downstream
Tssr114225	transcription start site region 114225	608 bp downstream
Tssr114226	transcription start site region 114226	234 bp upstream
Tssr114227	transcription start site region 114227	347 bp upstream
Tssr116943	transcription start site region 116943	1015 bp upstream