rs226401993 SNP Detail

Summary

• ID
  rs226401993
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80663252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTTCGA ATCGGATTCG
  GGGGTTGTGA GTTGAGCCTA AGATTTGGGG AGGGATCTGA GAAGAGATTG GAGACTCGAA
  TTTGGGGTCT GCCTCTCGGA TATGTGAGCT AGTTCTAATG TCAGGTGGCG AAGTGTTTGT
  GGTTACCTGT AGGGCGTTTG GGTAATAAAT CGTATGCTAT GTAGAGGTGG GGCTCGTCCC
  K
  GTGTTTGGAG TTCTTTGCAG AATACTGGGA TTTTGGGTGC TGTTGGGGAG GAATCCTATT
  ATATTCTTGG GTACATGTTG AGGACTCATT TCTTGGTGGG AGAGTATGGG ATCAGATTTG
  GGGTGTTGAG AAAGAAGCTT GTGTCGGTTT AGGAAGTCAC AGGTGGGGAA GCTGGGATGA
  GGTTTAGGTT GGATTTAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025658	MGP_WTSI_10_80290163	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226401993					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025658	MGP_WTSI_10_80290163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80663252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1912	CpG island 1912	within coordinates
Gm68058	predicted gene, 68058	344 bp upstream
Gm68060	predicted gene, 68060	809 bp downstream
Mir1982	microRNA 1982	1379 bp upstream
Oaz1	ornithine decarboxylase antizyme 1	within coordinates
Rr402063	regulatory region 402063	871 bp downstream
Rr435410	regulatory region 435410	715 bp distal
Rr435411	regulatory region 435411	1199 bp distal
Rr435412	regulatory region 435412	within coordinates
Rr435413	regulatory region 435413	1608 bp proximal
Tssr94629	transcription start site region 94629	1037 bp downstream
Tssr94630	transcription start site region 94630	725 bp downstream
Tssr98520	transcription start site region 98520	1141 bp upstream
Tssr98521	transcription start site region 98521	400 bp upstream