rs226416023 SNP Detail

Summary

• ID
  rs226416023
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100945399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGGGGGC CCATGGCGTC
  CAGCGCGCTC GTGAGGGGCA GCAACCGGTT ACAGAGGGCC AGGATCAGCG CCCACACCAT
  GACTCGGCCT GAGGGAGGGG CTTCGAATGC CGAGGCTCTG TTGCAAGACT GGAGATTGTG
  GCGTAGAGGC GAGGAACTTT TGTGGAAAGC TGAACGCTCT AGGCAGAGAC AACTCAGCTA
  S
  GGGGGGGGGC GCAGATCTGA CTGCTCAGGG TCCAGAGGAA CGAGGTTCCC AGCAGCTCTC
  CTTCCCCCAC CCCTGCAGCT CCCCATTCCC ACCCCCTCCA CCTTATGGAG GGCAGGAACT
  GGTGACCCAA CCCACAGCAA TGGCTGTGGA ACTGGGTAGG AATCTGGACC TTATATTGAA
  GTGCCTACTC TAACCCCACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325085111	CHEV_15_100877949	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226416023					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100945399 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	within coordinates
Rr509881	regulatory region 509881	670 bp distal
Rr509882	regulatory region 509882	within coordinates
Scn8a	sodium channel, voltage-gated, type VIII, alpha	1580 bp downstream
Tmdd1	transmembrane and death domain 1	121 bp upstream
Tssr136507	transcription start site region 136507	142 bp upstream
Tssr136508	transcription start site region 136508	133 bp upstream
Tssr136509	transcription start site region 136509	114 bp upstream
Tssr136510	transcription start site region 136510	89 bp upstream