rs226422373 SNP Detail

Summary

• ID
  rs226422373
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105434942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAAGGGGA AAAGGTCATT
  ATCAGGTTAA AGCAGTGGTT CTCAATCTGT GGGTCATGAC CCCTGTGAGG GAAGGCCATT
  GAAAAACACA GGTATTTATA TTAGGATTAA TAACAGTAGC AAAATACACA GTTATAAAAT
  AGCATTGAAA ATGATTTTAT GGCCGGTGGT CACCACAGAA TGGTATTAAA CGATCACAGC
  R
  TTAGGAAGGT TGAGAACCAC TGGGTTAAAG AGTAAAACAG GAGAAAAGGC ATCTGGAAGC
  TATAAAGAGA TGGAAGCTAT GTTCAGAGTG GAATACAGGT TGGGATGGAA GAGTTCAAAC
  AGAGTAGTCA TGGGACAAAA GAGCATACCA GGAGCGAAAG AAACTGAGGA AATTGTGCAG
  CTGGTGTTTA GGGAGACTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370573	CHEV_7_112934249	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226422373					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105434942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19545	CpG island 19545	1089 bp proximal
Dchs1	dachsous cadherin related 1	within coordinates
Gm57787	predicted gene, 57787	86 bp downstream
Rr652815	regulatory region 652815	378 bp proximal
Rr652816	regulatory region 652816	1909 bp proximal
Tssr74105	transcription start site region 74105	1748 bp downstream
Tssr74106	transcription start site region 74106	1771 bp downstream
Tssr74107	transcription start site region 74107	1809 bp downstream
Tssr74108	transcription start site region 74108	1832 bp downstream