rs226422539 SNP Detail

Summary

• ID
  rs226422539
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4877428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agttccagg acaaccaagg ctacacagag
  aaaccatgta tcgaaaaagc aaaaAATATA TAGAGGCATA AGCCTTGTGA ATCACATTAC
  TACCATTTTG GGGGAGGGTT ATCAATTTAA CATTTTTGAG AATGTTTAAA CTTTTCAATA
  K
  TTAAGGGCAA GACTGATTTA AAACCGTTTT GAATAAGACT CCAAAATCTC TCAGGACCTA
  GATTTTCCTG TGTAATTTAA TTAAGTCTTT TAGTCTTTAA GTCTTAGTTC ACAAACTCCT
  TTCCAGTCAA AACTGTATAT TTGGTTTCCT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319612494	CHEV_1_4797286	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226422539					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4877428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	236 bp proximal
Gm37988	predicted gene, 37988	687 bp upstream
Gm70766	predicted gene, 70766	59 bp downstream
Lypla1	lysophospholipase 1	618 bp upstream
Rr407434	regulatory region 407434	70 bp proximal
Rr407435	regulatory region 407435	515 bp proximal
Rr407436	regulatory region 407436	890 bp proximal
Tssr5801	transcription start site region 5801	437 bp upstream
Tssr5802	transcription start site region 5802	661 bp upstream
Tssr5803	transcription start site region 5803	1041 bp upstream
Tssr10888	transcription start site region 10888	455 bp downstream
Tssr10889	transcription start site region 10889	513 bp downstream