rs226425386 SNP Detail

Summary

• ID
  rs226425386
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43879601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGTTGTG TGAGCCTGAG
  TCGCAGCAGC TTGGAGCTGT CAGGAGGCTG GGCCACACGC TCCTCCCCTG TCCCTCTTGC
  ACAGCAACCG GAGGAGGGGA GGGTCGAGCC TAAAGGTAGA TTTTACGAGG AGGCTGTATG
  CTCAACCCAC CTCTGAGTTA TTCTATCCCC GGGGGTAAAA AGACTGTCTG GAAGCCTGCC
  S
  TGCTAGGATC TGACTCGCTC TGGTGGCATT GCTGCGCTCA GGGTTCTGGG TATCCGGGAG
  TCAGTGCAGT GACCAGGTAA GAAGCCCAAG GGCAGGGAAG GGCTTGTGAT GGTGTCAGTG
  GGCTACTGCG GGGACGTGGG AGCGTGGTCC TCAAGGTGGG TGGGCTGGAA CCACAACGTT
  CAAGTGTTTG GCTCAGGACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398252322	MGP_WTSI_17_43705659	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226425386					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398252322	MGP_WTSI_17_43705659	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43879601 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	219 bp distal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	within coordinates
Rr527121	regulatory region 527121	431 bp distal
Rr527122	regulatory region 527122	within coordinates
Tssr144685	transcription start site region 144685	705 bp downstream
Tssr144686	transcription start site region 144686	573 bp downstream
Tssr144687	transcription start site region 144687	553 bp downstream
Tssr144688	transcription start site region 144688	407 bp downstream
Tssr144689	transcription start site region 144689	252 bp downstream
Tssr144690	transcription start site region 144690	217 bp downstream
Tssr144691	transcription start site region 144691	169 bp downstream
Tssr144692	transcription start site region 144692	118 bp downstream
Tssr144693	transcription start site region 144693	71 bp downstream
Tssr144694	transcription start site region 144694	34 bp downstream
Tssr144695	transcription start site region 144695	6 bp downstream
Tssr144696	transcription start site region 144696	within coordinates
Tssr144697	transcription start site region 144697	686 bp upstream
Tssr148130	transcription start site region 148130	181 bp upstream
Tssr148131	transcription start site region 148131	1238 bp downstream
Tssr148132	transcription start site region 148132	1261 bp downstream