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rs226440916 SNP Detail
Summary
  • ID
    rs226440916
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr10:58394421 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      GATCCTAAT TAAGGTTTTT TTTAGACTGT
    ATTAGCTGTC TTTTGATATA ATAAAATACC AAGCAAGTAA CTTAAAACAA CATATATggg
    gctgaaaggt gactgagcat ttaggagtac ttgctgctct tacagaaaac ctgggtctgg
    K
    gctggtgaga tggctcagtg ggtaagagca cccgactgct cttccgaagg tccgaagttc
    aaatcccagc aaccacatgg tggctcataa ccatccgtaa tgagatctga ccccctcttc
    tggagggtct gaagacagct acagtgtact                                 
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss323319075 CHEV_10_58021347 CHEVERUD SCREENING_POP f SNP T G
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs226440916 SNP T G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:58394421 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ccdc138 coiled-coil domain containing 138 within coordinates
Rr215295 regulatory region 215295 within coordinates
Rr227981 regulatory region 227981 380 bp proximal
Rr227982 regulatory region 227982 1157 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory