rs226441645 SNP Detail

Summary

• ID
  rs226441645
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158225724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAATAACT AATGATATTG CATATATTTC CCCTTACCAT
  TCCTCTCTTG TGTGGCAAAT GTTTGTTCAA AGCCATTGTA CAATTTTTAC TGCTGGTAGT
  R
  GCTTTCTTAT TTTTGAGGGC TTTGCTTTAT TTTAGTAGTT TTTTTTTTAA TGTAGCAAGA
  TAACATAATA TCACCATTTT AGCCATTTAC CTAAGCAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320588885	CHEV_2_158209540	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226441645					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158225724 () rs orientation: forward

Symbol	Name	Function Class
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21318	transcription start site region 21318	1630 bp downstream
Tssr21319	transcription start site region 21319	1216 bp downstream
Tssr21320	transcription start site region 21320	1180 bp downstream
Tssr21321	transcription start site region 21321	1070 bp downstream
Tssr21322	transcription start site region 21322	947 bp downstream
Tssr21323	transcription start site region 21323	903 bp downstream
Tssr21324	transcription start site region 21324	865 bp downstream
Tssr21325	transcription start site region 21325	829 bp downstream
Tssr21326	transcription start site region 21326	805 bp downstream
Tssr21327	transcription start site region 21327	768 bp downstream
Tssr21328	transcription start site region 21328	722 bp downstream
Tssr21329	transcription start site region 21329	709 bp downstream
Tssr21330	transcription start site region 21330	620 bp downstream
Tssr21331	transcription start site region 21331	110 bp downstream
Tssr21332	transcription start site region 21332	14 bp upstream
Tssr21333	transcription start site region 21333	46 bp upstream
Tssr21334	transcription start site region 21334	813 bp upstream
Tssr21335	transcription start site region 21335	1169 bp upstream
Tssr21336	transcription start site region 21336	1223 bp upstream
Tssr21337	transcription start site region 21337	1327 bp upstream
Tssr21338	transcription start site region 21338	1894 bp upstream
Tssr27228	transcription start site region 27228	586 bp upstream