rs226445976 SNP Detail

Summary

• ID
  rs226445976
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40691536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggtccactc actgtcatct gcggtttgca
  ccgtcagaaa catcctgact tgtatccttg cttccttttc tccctgtgaa acactccatt
  tcccccagga acagccacag tgtgctttct tcaatgtaac atgacccatg caactcttct
  K
  ttgcctctat ggtgaaatgc ttgcctggcc tattaggatc catgggagtg atcccttcct
  gtctctgtga cttcatctcc ccgtgctttc ccttgttcat tgtgctccag acacactTAT
  TCACCACACC CTCTGTACCT CCTGGAGGGC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322919548	CHEV_9_40588323	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226445976					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40691536 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Gm16096	predicted gene 16096	287 bp downstream
Rr676919	regulatory region 676919	1955 bp distal
Tssr84467	transcription start site region 84467	94 bp upstream
Tssr84468	transcription start site region 84468	836 bp upstream
Tssr84469	transcription start site region 84469	888 bp upstream