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rs226458494 SNP Detail
Summary
  • ID
    rs226458494
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:48049496 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TATGCTACTA CCAAGCAGAG
    CAGAGAAATT ATACGAAGCA TTTCTCAAAA GTATGTTTCC TAAGAAGAAA AGCATATATT
    CCAAGAGATC AGGATATGCT GTTTTTAATG GCTTTGTTTT TGTCCTTTTA TACTCAATAT
    ATTCATTTAA GGGATCACTT GGGGAGATAG GGAACATTTT TATTGATCTA AAACCCAAAC
    R
    ATTTGTGAGG CAGGAGTTTG GATGATTGAG GCTCAGAGGC AAGGGAAACC CATGTGAGCT
    ACAAACAGAA GTAAGTATAA AGGCCTCAGA TTTAGTTTAC ACAACCTCTT TACAAATTTG
    GTAAAGGTAG AAGAGGTGGG CCTGGGTAGG CACCAAAGAT ACACAGATAG AGTCACTCTC
    CTGCTGGAGA CTTCAGAAAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss361430117 MGP_WTSI_4_48062368 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226458494 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss361430117 MGP_WTSI_4_48062368 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:48049496 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi14279 CpG island 14279 765 bp distal
Cpgi14280 CpG island 14280 402 bp distal
Cpgi14281 CpG island 14281 1994 bp proximal
Nr4a3 nuclear receptor subfamily 4, group A, member 3 Intron
Noncoding-Transcript-Variant
Rr591930 regulatory region 591930 1808 bp distal
Rr591931 regulatory region 591931 1450 bp distal
Rr591932 regulatory region 591932 149 bp distal
Rr591933 regulatory region 591933 1983 bp proximal
Tssr37201 transcription start site region 37201 1743 bp downstream
Tssr37202 transcription start site region 37202 1608 bp downstream
Tssr37203 transcription start site region 37203 1580 bp downstream
Tssr37204 transcription start site region 37204 1407 bp downstream
Tssr37205 transcription start site region 37205 1377 bp downstream
Tssr37206 transcription start site region 37206 1213 bp downstream
Tssr37207 transcription start site region 37207 433 bp downstream
Tssr37208 transcription start site region 37208 404 bp downstream
Tssr37209 transcription start site region 37209 430 bp upstream
Tssr37210 transcription start site region 37210 1281 bp upstream
Tssr37211 transcription start site region 37211 1758 bp upstream
Tssr37212 transcription start site region 37212 1781 bp upstream
Tssr37213 transcription start site region 37213 1871 bp upstream
Tssr37214 transcription start site region 37214 1883 bp upstream
Tssr37215 transcription start site region 37215 1934 bp upstream
Tssr41635 transcription start site region 41635 433 bp upstream
Tssr41636 transcription start site region 41636 389 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory