TATGCTACTA CCAAGCAGAG CAGAGAAATT ATACGAAGCA TTTCTCAAAA GTATGTTTCC TAAGAAGAAA AGCATATATT CCAAGAGATC AGGATATGCT GTTTTTAATG GCTTTGTTTT TGTCCTTTTA TACTCAATAT ATTCATTTAA GGGATCACTT GGGGAGATAG GGAACATTTT TATTGATCTA AAACCCAAAC R ATTTGTGAGG CAGGAGTTTG GATGATTGAG GCTCAGAGGC AAGGGAAACC CATGTGAGCT ACAAACAGAA GTAAGTATAA AGGCCTCAGA TTTAGTTTAC ACAACCTCTT TACAAATTTG GTAAAGGTAG AAGAGGTGGG CCTGGGTAGG CACCAAAGAT ACACAGATAG AGTCACTCTC CTGCTGGAGA CTTCAGAAAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss361430117 | MGP_WTSI_4_48062368 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs226458494 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss361430117 | MGP_WTSI_4_48062368 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr4:48049496 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi14279 | CpG island 14279 | 765 bp distal | ||||||
Cpgi14280 | CpG island 14280 | 402 bp distal | ||||||
Cpgi14281 | CpG island 14281 | 1994 bp proximal | ||||||
Nr4a3 | nuclear receptor subfamily 4, group A, member 3 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr591930 | regulatory region 591930 | 1808 bp distal | ||||||
Rr591931 | regulatory region 591931 | 1450 bp distal | ||||||
Rr591932 | regulatory region 591932 | 149 bp distal | ||||||
Rr591933 | regulatory region 591933 | 1983 bp proximal | ||||||
Tssr37201 | transcription start site region 37201 | 1743 bp downstream | ||||||
Tssr37202 | transcription start site region 37202 | 1608 bp downstream | ||||||
Tssr37203 | transcription start site region 37203 | 1580 bp downstream | ||||||
Tssr37204 | transcription start site region 37204 | 1407 bp downstream | ||||||
Tssr37205 | transcription start site region 37205 | 1377 bp downstream | ||||||
Tssr37206 | transcription start site region 37206 | 1213 bp downstream | ||||||
Tssr37207 | transcription start site region 37207 | 433 bp downstream | ||||||
Tssr37208 | transcription start site region 37208 | 404 bp downstream | ||||||
Tssr37209 | transcription start site region 37209 | 430 bp upstream | ||||||
Tssr37210 | transcription start site region 37210 | 1281 bp upstream | ||||||
Tssr37211 | transcription start site region 37211 | 1758 bp upstream | ||||||
Tssr37212 | transcription start site region 37212 | 1781 bp upstream | ||||||
Tssr37213 | transcription start site region 37213 | 1871 bp upstream | ||||||
Tssr37214 | transcription start site region 37214 | 1883 bp upstream | ||||||
Tssr37215 | transcription start site region 37215 | 1934 bp upstream | ||||||
Tssr41635 | transcription start site region 41635 | 433 bp upstream | ||||||
Tssr41636 | transcription start site region 41636 | 389 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 07/22/2025 MGI 6.24 |
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