rs226459351 SNP Detail

Summary

• ID
  rs226459351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72537080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GCAGAATAAG ACCTAGATTC
  R
  CTTTTGGGTC TCATGTACTC ATCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325896484	CHEV_X_70738813	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226459351					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72537080 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	within coordinates
Rr6090	regulatory region 6090	80 bp distal
Rr7747	regulatory region 7747	1493 bp proximal
Rr10758	regulatory region 10758	77 bp proximal
Tssr5633	transcription start site region 5633	197 bp downstream
Tssr5634	transcription start site region 5634	1223 bp downstream
Tssr5635	transcription start site region 5635	1578 bp downstream
Tssr161215	transcription start site region 161215	1470 bp downstream
Tssr161216	transcription start site region 161216	1452 bp downstream
Tssr161217	transcription start site region 161217	1413 bp downstream
Tssr161218	transcription start site region 161218	1400 bp downstream
Tssr161219	transcription start site region 161219	1339 bp downstream
Tssr161220	transcription start site region 161220	736 bp downstream
Tssr161221	transcription start site region 161221	677 bp downstream
Tssr161222	transcription start site region 161222	662 bp downstream
Tssr161223	transcription start site region 161223	492 bp downstream
Tssr161224	transcription start site region 161224	438 bp downstream
Tssr161225	transcription start site region 161225	260 bp downstream
Tssr161226	transcription start site region 161226	209 bp downstream
Tssr161227	transcription start site region 161227	159 bp downstream
Tssr161228	transcription start site region 161228	1124 bp upstream
Tssr161229	transcription start site region 161229	1157 bp upstream
Tssr161230	transcription start site region 161230	1181 bp upstream
Tssr161231	transcription start site region 161231	1198 bp upstream
Tssr161232	transcription start site region 161232	1249 bp upstream
Tssr161233	transcription start site region 161233	1321 bp upstream
Tssr161234	transcription start site region 161234	1341 bp upstream
Tssr161235	transcription start site region 161235	1406 bp upstream
Tssr161236	transcription start site region 161236	1449 bp upstream
Tssr161237	transcription start site region 161237	1503 bp upstream
Tssr161238	transcription start site region 161238	1539 bp upstream
Tssr161239	transcription start site region 161239	1588 bp upstream
Tssr161240	transcription start site region 161240	1602 bp upstream
Tssr161241	transcription start site region 161241	1638 bp upstream
Tssr161242	transcription start site region 161242	1671 bp upstream
Tssr161243	transcription start site region 161243	1835 bp upstream
Tssr161244	transcription start site region 161244	1859 bp upstream
Tssr161245	transcription start site region 161245	1954 bp upstream
Tssr163545	transcription start site region 163545	1411 bp upstream
Tssr163546	transcription start site region 163546	1347 bp upstream
Tssr163547	transcription start site region 163547	1144 bp downstream
Tssr163548	transcription start site region 163548	1250 bp downstream
Tssr163549	transcription start site region 163549	1327 bp downstream
Tssr163550	transcription start site region 163550	1382 bp downstream
Tssr163551	transcription start site region 163551	1467 bp downstream
Tssr163552	transcription start site region 163552	1593 bp downstream
Tssr163553	transcription start site region 163553	1679 bp downstream
Tssr163554	transcription start site region 163554	1698 bp downstream
Tssr163555	transcription start site region 163555	1725 bp downstream