rs226465468 SNP Detail

Summary

• ID
  rs226465468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24243284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCATGC GTGATGAAAA
  TATGGCTTCT GTTTTCCCTC CAGCCTCAGC AAGCCTCTTT CCCTTTAGTC TTGTTATACT
  ATAGTGACCA ACACTCTGTC TCCCTCTGCC CAGCTCCTGA GGCTCTCTCC TGGGTTTACT
  TACTCATCCT CTTCCCCAGC AACTGCCTTT CCAAATGCCA GTGTAGCTGT GTACCTAGTA
  Y
  AATGCTTAGA ACCTTCCTCC AGGAAGCCCT CCTTGACAAC ATCCCTCCCC TAGTAGCCTT
  CTCTGTTTCC ATAGCAACTA GCACTCTTCT CTTAGAACAT ACTATCCAAC TGTATCTGAC
  CTTATTAGTG AAGAATCACT TCAGTCCAAC AATGAGCATG GGCACATATA AGATAGATTT
  TTTTTAATGA TAAACTGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324294192	CHEV_13_24151170	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226465468					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24243284 () rs orientation: forward

Symbol	Name	Function Class
4933427I18Rik	RIKEN cDNA 4933427I18 gene	124 bp upstream
Carmil1	capping protein regulator and myosin 1 linker 1	within coordinates
D13Ertd224e	DNA segment, Chr 13, ERATO Doi 224, expressed	1191 bp distal
Tssr121764	transcription start site region 121764	within coordinates
Tssr121765	transcription start site region 121765	19 bp downstream