rs226466790 SNP Detail

Summary

• ID
  rs226466790
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133989025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCCGAG CAAGCAAAGC
  TGCTTTGCAA AGCTCGTTCG GTGGTTTAAA TCCTAGCCAG ATGCTACTGT GGGGGCTGAA
  GGACGAGGGT GGGTGGCCCA GGGCTCCACC CTAGTTACAT AGCCTGGAGG CAGGGAGCAG
  ACACCTGCCT GCCCTCGTCG CCCCGGCCAG CCTTCGCCCT CCTCCACTCT GTTCCCCCTC
  R
  CTGGGCAGAT CTGATTCAAA GCAACCGGTG GTGGGACCGC CAGGTGCCCA GCTGTCCCAG
  CTGAAAGGCC TCGCCTTTGC CGCCGCCCCA GCTCCGAGCA AGACAGAACT GCCTCCAGGA
  GGAGGTGCTC ACGCCACCAA CTCACACGGT TTAGGGCCGC CCTGTGAAAT GCAGACAATC
  CTGTCTCCTG TGGGCAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351510340	MGP_WTSI_1_135957864	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226466790					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351510340	MGP_WTSI_1_135957864	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133989025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	within coordinates
Cpgi759	CpG island 759	1840 bp proximal
Gm19497	predicted gene, 19497	340 bp upstream
Gm57140	predicted gene, 57140	within coordinates
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	1225 bp distal
Tssr8846	transcription start site region 8846	197 bp downstream
Tssr8847	transcription start site region 8847	180 bp downstream
Tssr8848	transcription start site region 8848	137 bp downstream
Tssr13763	transcription start site region 13763	472 bp upstream
Tssr13764	transcription start site region 13764	414 bp upstream
Tssr13765	transcription start site region 13765	328 bp upstream
Tssr13766	transcription start site region 13766	1995 bp downstream