rs226478693 SNP Detail

Summary

• ID
  rs226478693
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151824922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACGGGGA AGGAAAAAAG
  CTGGCCAGTT CAGATATGGG AAGAATGGGG AGAAGTATAG AGGGTTGGGA ATTTGAAAGT
  AGGTGTGAAG CAGTGGGGAA GGGGGAACTG AGGGTAGCCA CTAGAAAGTC CCAGAGGCCT
  GGGACCCAAG AGGTCCCCAG GACCCAACAG GGAGGACATT AGCCAAAATA TCCAACAAAG
  S
  AGAGAGAGAA CCTGTAGAGA CCATATCAGT GGATAGGCAT GGCCCCCGGT TGAGAAATGG
  GGCCACTCAC CCACCTCAAA AATATTAATC CAGAATTCCT CCTGGCAAAA GGAAGTGCAG
  GACAAAGAGT GGAGCAGAGA CTGAAGGAAA GGCCATCCAG GGACTGCCCC ACCTAAGGAT
  CCATCCCATC TGCGGACACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028134	CHEV_3_151782249	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226478693					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151824922 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			821 bp proximal
Tssr1098	transcription start site region 1098			811 bp downstream
Tssr32394	transcription start site region 32394			1025 bp upstream