rs226479265 SNP Detail

Summary

• ID
  rs226479265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52148969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGATGGTT CTATCTAGAG
  GTCAGAATTC CCAACACTGG AACAAGGAGG GATTCCAACT TCACCAGGCT CAAACCGCCT
  TAGAGAGGCC CAGAGGGACT TCAGTCAGAT TTATGTCTGA GGGATCCTCT CACAGTAACC
  GTATCACCTT CCTAAGTAGC AAAGATTCTG GAAAGATTTG TTTTCCCTGG TGTGTGTGGG
  R
  GGGGGGGGCG GGGAGGGCAC ATTTCTGGAG ATGTTTCTCT CCTCCTAGGC TGGCTGTAAT
  AGCTAGAAGT GGCTTGGAGC GTGGAGCTGG TACAAGGCCA GAGGCCCCAC CTCCTAAAGG
  CATTCATTTA CCTGAGCTGG AGCCGCTGGT TTTCTGCTTA GTGTTCTGCC TTGACTCTTT
  CATCCAGGGA AAGATTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308272	MGP_WTSI_6_52121988	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226479265					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308272	MGP_WTSI_6_52121988	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52148969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17416	CpG island 17416	922 bp distal
Cpgi17417	CpG island 17417	371 bp proximal
Gm15050	predicted gene 15050	892 bp upstream
Gm28308	predicted gene 28308	within coordinates
Hoxa3	homeobox A3	within coordinates
Rr630350	regulatory region 630350	402 bp proximal
Rr630351	regulatory region 630351	903 bp proximal
Tssr56504	transcription start site region 56504	821 bp upstream
Tssr56505	transcription start site region 56505	886 bp upstream
Tssr56506	transcription start site region 56506	958 bp upstream