rs226479532 SNP Detail

Summary

• ID
  rs226479532
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135110125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGTCTCC TCCCTAGAAG AGATGCAGGG
  ATAGATGAGG CTTTGGGAAG GTTGGTCCCT GGAAGCAGCC TGGACTGACT GAGCCCCTGC
  CTTGTGTGGA TGATGCTTAT ACAGTGACAC CAAGATGTGC TAATGGGCAA ACCTTGTgtc
  M
  caaagggaaa tggtagccaa gtcagggctt agagccaagt ttccaggttc acagtccagt
  atctgtcacc actCTCTGTC CTAGGGAGTC TCCCTCCCCC ATCCCTTCTC CATCACTATC
  TGAAGCAGGT TAAAGGTGTG ACACCTCTCC                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319988337	CHEV_1_137078964	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226479532					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135110125 () rs orientation: forward

Symbol	Name	Function Class
Gm70872	predicted gene, 70872	1606 bp upstream
Gm70875	predicted gene, 70875	304 bp downstream
Rr419095	regulatory region 419095	within coordinates
Rr419096	regulatory region 419096	1116 bp proximal
Rr419097	regulatory region 419097	1685 bp proximal
Tssr13831	transcription start site region 13831	1493 bp upstream