rs226483627 SNP Detail

Summary

• ID
  rs226483627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147020442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATTGTAAG CTGCACCACA ACCTAACTGG
  ATTTGAGGGT TGAATAGGAT CACTTGGAGG CCATATTACA TGCTGGCCAA AAGATGGTTT
  CTTCGTTCTA GTACCTCCCG CGAAAAGCGG GGAAGGTTGG ACCGAAGTCA GAATTTCTCT
  R
  AACTCTCCAT TACACTCATA CTGAGCCACC TTCCCCTGCC GTCATCTAAA ATGGTCCGAG
  ACAGTTCGGG ATCATGGGAA TGGCGCCTGA GTGCTATAAA TGGGAATTCC TAAGGGTCAG
  CACACTCCTG GCTCACGGAA CCACTTTGCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320548175	CHEV_2_147004258	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226483627					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147020442 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	23 bp distal
Cpgi12377	CpG island 12377	120 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr406682	regulatory region 406682	1768 bp proximal