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rs226489683 SNP Detail
Summary
  • ID
    rs226489683
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44130837 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTCCCTTT TTGCTTTCAC
CTTCATCACC TTCATAATCC CCTCTTCTCC TTGAGCCCCT CTATTGCCTC CTCTTCTGCT
CCCCCTCCTT CATCTTTTTT ATCCTTTCTC TTCTTCCTCT CATTTATTTC AACTATCCCC
CTCTTGCTTC TGTCTGATTC TCTCTTCCTG ACTACCTTCC TCTCCTCCTC CTCTATCTCC
K
CCTCTGCTTC CTCTCCTCCA ACTCATTTTC TCCTTTCTTG TCTTCTTCTC TTCCCTCCTC
TCCTTAATCT CATCTATCCC CCTTCCTCCT TCCCTCCTAT CTCCTCTGCC TCCTCTATTC
CCCCTTCATC CTTTTCCTGT CTCCTCCTCC TCTATTCCTT CTGCTTCCTC CTTCACCTCC
TGTATCCTCT TCTTCTTTCC                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156160 MGP_WTSI_7_51736783 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226489683 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156160 MGP_WTSI_7_51736783 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44130837 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646103 regulatory region 646103 1171 bp proximal
Rr646104 regulatory region 646104 1852 bp proximal
Tssr2228 transcription start site region 2228 1330 bp downstream
Tssr2229 transcription start site region 2229 1055 bp downstream
Tssr2230 transcription start site region 2230 872 bp downstream
Tssr2231 transcription start site region 2231 745 bp downstream
Tssr2232 transcription start site region 2232 571 bp downstream
Tssr2233 transcription start site region 2233 526 bp downstream
Tssr2234 transcription start site region 2234 378 bp downstream
Tssr2235 transcription start site region 2235 254 bp upstream
Tssr66297 transcription start site region 66297 1983 bp downstream
Tssr66298 transcription start site region 66298 1928 bp downstream
Tssr66299 transcription start site region 66299 1908 bp downstream
Tssr66300 transcription start site region 66300 1885 bp downstream
Tssr66301 transcription start site region 66301 1869 bp downstream
Tssr66302 transcription start site region 66302 1828 bp downstream
Tssr66303 transcription start site region 66303 1819 bp downstream
Tssr66304 transcription start site region 66304 1814 bp downstream
Tssr66305 transcription start site region 66305 1775 bp downstream
Tssr66306 transcription start site region 66306 1721 bp downstream
Tssr66307 transcription start site region 66307 1672 bp downstream
Tssr66308 transcription start site region 66308 1655 bp downstream
Tssr66309 transcription start site region 66309 1605 bp downstream
Tssr66310 transcription start site region 66310 1536 bp downstream
Tssr66311 transcription start site region 66311 1513 bp downstream
Tssr66312 transcription start site region 66312 1494 bp downstream
Tssr66313 transcription start site region 66313 1484 bp downstream
Tssr66314 transcription start site region 66314 1466 bp downstream
Tssr66315 transcription start site region 66315 1459 bp downstream
Tssr66316 transcription start site region 66316 1394 bp downstream
Tssr66317 transcription start site region 66317 1378 bp downstream
Tssr66318 transcription start site region 66318 1337 bp downstream
Tssr66319 transcription start site region 66319 1309 bp downstream
Tssr66320 transcription start site region 66320 1285 bp downstream
Tssr66321 transcription start site region 66321 1261 bp downstream
Tssr66322 transcription start site region 66322 1245 bp downstream
Tssr66323 transcription start site region 66323 1207 bp downstream
Tssr66324 transcription start site region 66324 1154 bp downstream
Tssr66325 transcription start site region 66325 1113 bp downstream
Tssr66326 transcription start site region 66326 1103 bp downstream
Tssr66327 transcription start site region 66327 1083 bp downstream
Tssr66328 transcription start site region 66328 1065 bp downstream
Tssr66329 transcription start site region 66329 1026 bp downstream
Tssr66330 transcription start site region 66330 1013 bp downstream
Tssr66331 transcription start site region 66331 999 bp downstream
Tssr66332 transcription start site region 66332 966 bp downstream
Tssr66333 transcription start site region 66333 931 bp downstream
Tssr66334 transcription start site region 66334 925 bp downstream
Tssr66335 transcription start site region 66335 914 bp downstream
Tssr66336 transcription start site region 66336 900 bp downstream
Tssr66337 transcription start site region 66337 884 bp downstream
Tssr66338 transcription start site region 66338 800 bp downstream
Tssr66339 transcription start site region 66339 768 bp downstream
Tssr66340 transcription start site region 66340 701 bp downstream
Tssr66341 transcription start site region 66341 652 bp downstream
Tssr66342 transcription start site region 66342 623 bp downstream
Tssr66343 transcription start site region 66343 597 bp downstream
Tssr66344 transcription start site region 66344 440 bp downstream
Tssr66345 transcription start site region 66345 403 bp downstream
Tssr66346 transcription start site region 66346 331 bp downstream
Tssr66347 transcription start site region 66347 313 bp downstream
Tssr66348 transcription start site region 66348 268 bp downstream
Tssr66349 transcription start site region 66349 239 bp downstream
Tssr66350 transcription start site region 66350 234 bp downstream
Tssr66351 transcription start site region 66351 210 bp downstream
Tssr66352 transcription start site region 66352 120 bp downstream
Tssr66353 transcription start site region 66353 108 bp downstream
Tssr66354 transcription start site region 66354 93 bp downstream
Tssr66355 transcription start site region 66355 62 bp downstream
Tssr66356 transcription start site region 66356 50 bp downstream
Tssr66357 transcription start site region 66357 42 bp downstream
Tssr66358 transcription start site region 66358 26 bp downstream
Tssr66359 transcription start site region 66359 within coordinates
Tssr66360 transcription start site region 66360 3 bp upstream
Tssr66361 transcription start site region 66361 29 bp upstream
Tssr66362 transcription start site region 66362 61 bp upstream
Tssr66363 transcription start site region 66363 78 bp upstream
Tssr66364 transcription start site region 66364 111 bp upstream
Tssr66365 transcription start site region 66365 131 bp upstream
Tssr66366 transcription start site region 66366 151 bp upstream
Tssr66367 transcription start site region 66367 179 bp upstream
Tssr66368 transcription start site region 66368 201 bp upstream
Tssr66369 transcription start site region 66369 235 bp upstream
Tssr66370 transcription start site region 66370 277 bp upstream
Tssr66371 transcription start site region 66371 702 bp upstream
Tssr66372 transcription start site region 66372 865 bp upstream
Tssr66373 transcription start site region 66373 1155 bp upstream
Tssr66374 transcription start site region 66374 1213 bp upstream
Tssr66375 transcription start site region 66375 1224 bp upstream
Tssr66376 transcription start site region 66376 1237 bp upstream
Tssr66377 transcription start site region 66377 1276 bp upstream
Tssr66378 transcription start site region 66378 1298 bp upstream
Tssr66379 transcription start site region 66379 1310 bp upstream
Tssr66380 transcription start site region 66380 1343 bp upstream
Tssr66381 transcription start site region 66381 1362 bp upstream
Tssr66382 transcription start site region 66382 1386 bp upstream
Tssr66383 transcription start site region 66383 1496 bp upstream
Tssr66384 transcription start site region 66384 1594 bp upstream
Tssr72202 transcription start site region 72202 1605 bp upstream
Tssr72203 transcription start site region 72203 1225 bp upstream
Tssr72204 transcription start site region 72204 625 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory