rs226494600 SNP Detail

Summary

• ID
  rs226494600
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10609030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCTCAC AAAGGCTCCA
  AGGCACCACC CTCCCCCACC CCAGAATTTG GAGCTATGCT TACATTTTCC AGGAACCCTG
  GCTGAGCTGG AATGATTGGG GTAGAGTAGA CGCTGGAGAG GGCACAAACT AGAGGAGCTG
  AACATGTTAA CTCATGTGCT GGGAAGATGG TCTCAGTCCA GCTCCACCAT GCCACCCCAC
  Y
  CCCTCCCCAC CCCATTCCAG CTCTTCATTT TAGTTCACAC TTCACCGTAA GGATGCTTGG
  ATTTGGCCAA TTCTATCCAT GGTTCAGGTC ACTTCCTGAC AGTAGCTGTA GGAGTGGACC
  TTGTTTTCCC TAGTCCCTTC CCTCAGGCCC CTTCCCTCAG GCCCCTTCCC TAAGGCCCAC
  GGTGTTGTTG AAAAGGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395386249	MGP_WTSI_16_10791259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226494600					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395386249	MGP_WTSI_16_10791259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10609030 () rs orientation: forward

Symbol	Name	Function Class
Gm46563	predicted gene, 46563	within coordinates
Prm2	protamine 2	211 bp downstream
Prm3	protamine 3	252 bp upstream
Rr511598	regulatory region 511598	398 bp distal
Rr511599	regulatory region 511599	259 bp distal
Tssr137053	transcription start site region 137053	267 bp upstream
Tssr137054	transcription start site region 137054	417 bp upstream
Tssr137055	transcription start site region 137055	635 bp upstream
Tssr137056	transcription start site region 137056	658 bp upstream
Tssr139950	transcription start site region 139950	247 bp upstream
Tssr139951	transcription start site region 139951	216 bp upstream
Tssr139952	transcription start site region 139952	313 bp downstream
Tssr139953	transcription start site region 139953	418 bp downstream
Tssr139954	transcription start site region 139954	467 bp downstream
Tssr139955	transcription start site region 139955	565 bp downstream
Tssr139956	transcription start site region 139956	929 bp downstream
Tssr139957	transcription start site region 139957	1967 bp downstream