rs226496716 SNP Detail

Summary

• ID
  rs226496716
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154720853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCTCCCT CCTCTGAGCC
  CGGCTGGCGG ACGCCAAAGG CGGTGCTCTA GCGCCCACTA TTTCAAAAGC CCGGAATATG
  ATTTGACCAG GACTGAGAGC CACTCGGAGA GAGAGAGGGA GAGAGCGAGC GAAGAGGAAA
  AGTTACTCTC CCCTTTCGTC AACTTTTCGC TAACTTTCGC TTTTCTCGCT CCTCCACCCC
  M
  GGCCCTCCCC CTCGGCCCCC CTCCCCGGCC CCCACCGCGC GCCTCGGGTT CCCGGGCCCG
  AGCGCCTGAC ACTGTGGGGG GGAGGGGGTT CTGCGGGGAG GGGGCCGGCG CCTTCGGGGA
  GCGCGCGGCC CGGGCGCCCC GAGCCTCCGC GCGGAGCCCG GCCGCCCCGG AGCGCGGGAG
  GCGGAGCAGC CCCCGGACCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363773543	MGP_WTSI_4_154010505	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226496716					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363773543	MGP_WTSI_4_154010505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154720853 () rs orientation: forward

Symbol	Name	Function Class
5930403L14Rik	RIKEN cDNA 5930403L14 gene	29 bp upstream
Cpgi15444	CpG island 15444	within coordinates
Gm57100	predicted gene, 57100	within coordinates
Prdm16	PR domain containing 16	within coordinates
Prdm16os	Prdm16 opposite strand transcript	1184 bp upstream
Rr100673	regulatory region 100673	within coordinates
Tssr1394	transcription start site region 1394	514 bp upstream
Tssr40591	transcription start site region 40591	745 bp upstream
Tssr40592	transcription start site region 40592	1150 bp upstream
Tssr40593	transcription start site region 40593	1173 bp upstream
Tssr44877	transcription start site region 44877	261 bp upstream
Tssr44878	transcription start site region 44878	181 bp upstream
Tssr44879	transcription start site region 44879	158 bp upstream
Tssr44880	transcription start site region 44880	39 bp upstream
Tssr44881	transcription start site region 44881	377 bp downstream
Tssr44882	transcription start site region 44882	413 bp downstream
Tssr44883	transcription start site region 44883	435 bp downstream
Tssr44884	transcription start site region 44884	567 bp downstream