rs226498838 SNP Detail

Summary

• ID
  rs226498838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:78070607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTCGAG CTTCTTGGGA
  ATACCTTGTT CATCATGTCA TGGTAAGGGA GAACCCGGTG AAATGACACA GGCAAAATCT
  TCACAACCCC TGGAGCCAGG GAGGGAGGCC ATCTTAACCC AGCAGCGTCT GACTTCTAAG
  TTGCCTAAGA CTCTCTCAAT GTTTAAACAC CTTCTGGGGA CAGCAGAGTG CCTAGGCCTA
  Y
  CTACTATCTA GGTAAACAGA CCAGGATGTC ATACAGAGTT AGACCCTCGT GGACAAAGTC
  TAACGCTAGT GAATAAAGAA ACCTTAGCAG TAAAGTTGGT GTTCCTCAGC TTCCGACTGA
  TATGACCTGT TTTCATGGGC CCTTGTTCTG TCACTTGTCC CCTAGGCTAT GGGCGCCTTC
  TTCTCTGGTA TCTTTTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383952641	MGP_WTSI_11_77993283	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226498838					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383952641	MGP_WTSI_11_77993283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:78070607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3334	CpG island 3334	380 bp distal
Gm73764	predicted gene, 73764	1209 bp upstream
Mir7653	microRNA 7653	894 bp downstream
Rpl23a	ribosomal protein L23A	1154 bp downstream
Rr402759	regulatory region 402759	1653 bp downstream
Rr451897	regulatory region 451897	1220 bp distal
Rr451899	regulatory region 451899	1781 bp distal
Rr451900	regulatory region 451900	1009 bp distal
Rr451901	regulatory region 451901	500 bp distal
Snord4a	small nucleolar RNA, C/D box 4A	1906 bp downstream
Snord42a	small nucleolar RNA, C/D box 42A	1521 bp downstream
Tlcd1	TLC domain containing 1	within coordinates
Tssr103232	transcription start site region 103232	1634 bp downstream
Tssr103233	transcription start site region 103233	1086 bp downstream
Tssr103234	transcription start site region 103234	1009 bp downstream
Tssr103235	transcription start site region 103235	795 bp downstream
Tssr103236	transcription start site region 103236	779 bp downstream
Tssr109377	transcription start site region 109377	1185 bp upstream