rs226504020 SNP Detail

Summary

• ID
  rs226504020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97022623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGTTTA GGGTGTGCAC
  ACCTATCAAG GCCGAATAGG GAAACTCTGG AATGGGAGAG GATTTTCATT TCTTTTTTTC
  TCCTTCTGGG TCTTGATCAA GATGAAGAAA AACATCTTTT TTTCTTTTGA GTTGGATTCC
  CCAAATCAAA TCACAGAGAA GAAAGAGATG GAAAACTCCA CTGAGCTGGG TGTCCTCCCC
  Y
  GCCTTAGCCT GAAGGCTTCT AGAAACCTAG TTTCTGATTA ACCAGAGCCT AGTCCCAGAT
  TAGACTCGAT GACTCGACAG ATCACACGTG TAGCCTGGAC TCCTTCCCTC ATGGCAACTC
  TTTCTGCTTT CTAAATAAAG ATAGCTTAGC TTCTAGATCA AGGTCGATCG GCTAGAATAA
  CACGCAGGCC TGGTTGGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323116067	CHEV_9_97040989	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226504020					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97022623 () rs orientation: forward

Symbol	Name	Function Class
Gm57041	predicted gene, 57041	513 bp upstream
Rr685156	regulatory region 685156	within coordinates
Tssr86631	transcription start site region 86631	543 bp upstream