rs226504272 SNP Detail

Summary

• ID
  rs226504272
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48052114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC AATAGGAGCT CATCATCTGG
  S
  GAAGGCACAT GTGCCGTGTG CGGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321109605	CHEV_4_48064986	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226504272					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48052114 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14281	CpG island 14281	within coordinates
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr591933	regulatory region 591933	614 bp distal
Tssr37210	transcription start site region 37210	1333 bp downstream
Tssr37211	transcription start site region 37211	846 bp downstream
Tssr37212	transcription start site region 37212	817 bp downstream
Tssr37213	transcription start site region 37213	742 bp downstream
Tssr37214	transcription start site region 37214	718 bp downstream
Tssr37215	transcription start site region 37215	670 bp downstream
Tssr37216	transcription start site region 37216	579 bp downstream