rs226512420 SNP Detail

Summary

• ID
  rs226512420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGGGTAC ATCGGTGCCA
  CTTTAATGGC TGCAGGAAAG TTTACACGAA AAGCTCCCAC TTGAAAGCAC ATCAGCGCAC
  TCACACAGGT CAGTCCCCTC TTGGGGCCTG GGTGGTCAGC TGCTGGTGGG CGCCCTCAGT
  CGATCAGCAC TGGGAGGGAG CCAGGACCCC CCCAGGATGC GGTCACAAGC AAGACAGTCC
  Y
  CACTTCCTAG ATTCTTGTCT CTAAGGAATT GGGTCTTTTT TGGAGTTCAG AGTAGAATCT
  TAAAAGACTG GACATTTGAA TCAGATGAAT GGTTCATGCT TTCAGATTAA ACAGGAGGCC
  AGATCACATT CTCCATGGAT ACCCAAACCT TCACCCACTG GGTGCTCATT TCCCATTGTC
  CCATGCATCG TGCTATGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224099	CHEV_13_5864703	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226512420					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915456 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	616 bp downstream
Tssr118246	transcription start site region 118246	1631 bp downstream
Tssr118247	transcription start site region 118247	1561 bp downstream
Tssr118248	transcription start site region 118248	960 bp downstream
Tssr118249	transcription start site region 118249	755 bp downstream
Tssr118250	transcription start site region 118250	689 bp downstream
Tssr118251	transcription start site region 118251	654 bp downstream
Tssr118252	transcription start site region 118252	596 bp downstream
Tssr118253	transcription start site region 118253	953 bp upstream
Tssr118254	transcription start site region 118254	980 bp upstream
Tssr121319	transcription start site region 121319	1143 bp upstream
Tssr121320	transcription start site region 121320	1106 bp upstream
Tssr121321	transcription start site region 121321	1095 bp upstream
Tssr121322	transcription start site region 121322	1054 bp upstream