rs226527900 SNP Detail

Summary

• ID
  rs226527900
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:62763871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAAAAAAAAA AAAAAAAAAG
  A
  TGCCTGACAT GTTACTTAAC TCTAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319742690	CHEV_1_62771286	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226527900					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:62763871 () rs orientation: forward

Symbol	Name	Function Class
Nrp2	neuropilin 2	Intron
Rr412039	regulatory region 412039	1781 bp distal
Rr412040	regulatory region 412040	1972 bp distal
Rr412041	regulatory region 412041	within coordinates
Tssr6998	transcription start site region 6998	1084 bp upstream
Tssr6999	transcription start site region 6999	1303 bp upstream
Tssr7000	transcription start site region 7000	1599 bp upstream
Tssr7001	transcription start site region 7001	1685 bp upstream
Tssr7002	transcription start site region 7002	1766 bp upstream
Tssr7003	transcription start site region 7003	1798 bp upstream
Tssr7004	transcription start site region 7004	1953 bp upstream