rs226528610 SNP Detail

Summary

• ID
  rs226528610
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55067974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAACATCA CTAAAAGATC ACCCAGAATT
  GTCTTGTGAA TCCTCTTTTA TAAAAATAAG ATTTTTTCAT gctgggcgtg gtggcgcacg
  cctttaatcc cagcactcag gaggcagagg caggcggatt tctgagttca aggccagcct
  R
  ttctacaaag tgagttccac agggctacac agagaaaccc tgtctcaaaa aacaaaaACA
  AAACAAAAAA GATTTTTCTC ACCACAGCCT ACTTGTCTGT ATGTTTGTTC CTGAAAGAAT
  ACTAATATGG TTCAGGACAG GAAGGAGAGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319727224	CHEV_1_55085659	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs226528610					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55067974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	1070 bp distal
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Rr411123	regulatory region 411123	1751 bp distal
Rr411124	regulatory region 411124	1345 bp distal
Rr411125	regulatory region 411125	1298 bp distal
Rr411126	regulatory region 411126	119 bp distal
Rr411127	regulatory region 411127	27 bp proximal
Sf3b1	splicing factor 3b, subunit 1	1334 bp upstream
Tssr6708	transcription start site region 6708	1215 bp downstream
Tssr11708	transcription start site region 11708	1409 bp upstream
Tssr11709	transcription start site region 11709	1331 bp upstream