rs226534439 SNP Detail

Summary

• ID
  rs226534439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135777990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGATAAA GGCATGGACT
  TGCCCAGCCA AGCCTGATTT TTTTTTTTTT TTGTATGCAT GGAGGCATCA GAATATTTTG
  TTTTAGATAA CCTAAGTCCC TACTTCTGCT GGTGTGTCTC TGTACTCGCA GTGACCATGC
  CAGGCAAACG CAATCCAAAC CACACGGTCC TAAGCCCCAG ACCTATGCTT GGCATAGCAG
  R
  TAGTCTCTGC TGAGCAGTGA ATCACCTTCT TACTGTCTTC CTGTCTCCCA TCCTGCTCCT
  CTCCATATCT CTGTGGCGGT CTTGGTCTTT CTCTCTGGGT CTTTCTCTCA TGGTTTCCTG
  GTTTAGCAAG CTCAGGTGGG TACAAACCTC CAGTCCTCTT CCTCCTCACT GTAGCTTTAG
  AGAGCCCCCT GGGAGGGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552103	MGP_WTSI_1_137746829	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226534439					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552103	MGP_WTSI_1_137746829	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135777990 () rs orientation: forward

Symbol	Name	Function Class
Rr12645	regulatory region 12645	411 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr227	transcription start site region 227	807 bp upstream
Tssr9020	transcription start site region 9020	1404 bp downstream
Tssr9021	transcription start site region 9021	1384 bp downstream
Tssr9022	transcription start site region 9022	896 bp downstream
Tssr9023	transcription start site region 9023	822 bp downstream
Tssr9024	transcription start site region 9024	786 bp downstream
Tssr9025	transcription start site region 9025	496 bp downstream
Tssr9026	transcription start site region 9026	298 bp downstream
Tssr9027	transcription start site region 9027	180 bp downstream
Tssr9028	transcription start site region 9028	142 bp downstream
Tssr9029	transcription start site region 9029	425 bp upstream
Tssr9030	transcription start site region 9030	460 bp upstream
Tssr9031	transcription start site region 9031	519 bp upstream
Tssr9032	transcription start site region 9032	1102 bp upstream
Tssr9033	transcription start site region 9033	1947 bp upstream
Tssr13894	transcription start site region 13894	1399 bp upstream
Tssr13895	transcription start site region 13895	1355 bp upstream
Tssr13896	transcription start site region 13896	828 bp upstream
Tssr13897	transcription start site region 13897	800 bp upstream
Tssr13898	transcription start site region 13898	485 bp downstream
Tssr13899	transcription start site region 13899	553 bp downstream
Tssr13900	transcription start site region 13900	563 bp downstream
Tssr13901	transcription start site region 13901	1124 bp downstream
Tssr13902	transcription start site region 13902	1985 bp downstream