rs226534630 SNP Detail

Summary

• ID
  rs226534630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83689713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTCTGT CACCCAAGTC
  AATATCTTAG AGCAGGTGGA GTACAACTTT CCTGACCCCC ACCACCACTG TCACCATGTG
  AGTGGCCCTG GGGATCTGAG AGCCAGCTAG GGCAGGGCAT GGAGGTACAG GAAGCTCTCT
  TAAATTAAGA CGCTGCCAGG GACCCTGAAT AAAGAAACAC TCCTGGGAAT AGGTGTGGTC
  R
  TTGGAAGGCT GGGTGGCTAC TGCCATTCTA GGGACCCGCT TGATGGTGTA AGACAGTTAC
  ACCACCAGGA ATCCCCGCAG GTGTGAGGAC TTGTAGGTTA CCTGGGGTTA ATATGAATTC
  CCTTTTGTCA TCTGAGGGGT TCTAAGGACA AGGAGCGACC ACCAGTTGAG TTTCGTTGAG
  GGAATCTGCA AGCCTTCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369037722	MGP_WTSI_6_83662725	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs226534630					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369037722	MGP_WTSI_6_83662725	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83689713 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	301 bp distal
Cpgi17612	CpG island 17612	1835 bp proximal
D6Mit8	DNA segment, Chr 6, Massachusetts Institute of Technology 8	1138 bp proximal
D6Mit8.1	DNA segment, Chr 6, Massachusetts Institute of Technology 8.1	1295 bp proximal
D6Mit8.2	DNA segment, Chr 6, Massachusetts Institute of Technology 8.2	1093 bp proximal
Gm32943	predicted gene, 32943	67 bp downstream
Gm55235	predicted gene, 55235	1799 bp downstream
Gm66907	predicted gene, 66907	1818 bp upstream
Tssr57361	transcription start site region 57361	1443 bp downstream
Tssr57362	transcription start site region 57362	1805 bp upstream
Tssr61702	transcription start site region 61702	1866 bp upstream
Vax2	ventral anterior homeobox 2	within coordinates
Vax2os	ventral anterior homeobox 2, opposite strand	530 bp upstream